LocalMachine% scp -P1209 hello_world.py works like cp but uses ssh to connect, so you will be asked for your campus passphrase again. LocalMachine% scp -P1209 LocalFile is a specific example

Open a Terminal and use the scp command, executed on your local machine: The easiest methods are available right from your command line. How to Download MobaXterm in windows Double click to open and edit the file Access the subdirectories Drag and drop the files to/from the local computer. There are several ways to transfer files from a Linux or Mac machine to Shamu.

To correct this problem, execute the built-in utility dos2unix on each ASCII file you upload from your Windows machine to ~]$ dos2unix filename This will cause problems for most Linux-based applications. Note: Windows-based editors generally put an extra “carriage return” (also referred to as control-M/^M) character at the end of each line of text. When you log in to a remote Shamu session using SSH, a graphical SFTP (Secure File Transfer Protocol) browser appears in the left sidebar allowing you to drag and drop files directly to or from Shamu using the SFTP connection. Other common SFTP applications are listed below all of these will work fine with Shamu. This guide will use the “MobaXterm” application, which was also used in the connecting (ssh) and X-forwarding guides. On Microsoft Windows, an SFTP client must be downloaded to transfer files to Shamu.

Below are instructions for the various operating systems. Shamu uses the Secure FTP protocol to tranfer files.

Work directory - /work/abc123 - This directory is where you should place any input/output files as well as logs for your running jobs.

There are no quotas limits and this location is backed up nightly.

$HOME directory - /home-new/abc123 - This directory is entirely controlled by you and the default permissions are that nobody else can see or access your files.

Make sure that you activate Display SFTP browser in the Advanced SSH settings tab of the session settings window. Most users will be storing their files in one of two locations, $HOME or /work. Note for MobaXterm users on Windows: MobaXterm automatically starts an sftp session alongside your ssh session that you can use to easily transfer data from your laptop or desktop computer to the HPC and back. Users on Shamu are automatically granted several locations to store their files.

Mobaxterm transfer files